;PMID: 10754205 ;source_file_1358.mrg ;Release 0.9 of PennBioIE ;Funded by NSF ITR EIA-0205448 ;0)section:[e:0..37] = [t:0..37] ;1)sentence:[e:42..145] = [t:42..145] ;2)section:[e:149..190] = [t:149..190] ;3)section:[e:194..297] = [t:194..297] ;4)sentence:[e:301..388] = [t:301..388] ;5)sentence:[e:389..443] = [t:389..443] ;6)sentence:[e:444..611] = [t:444..611] ;7)sentence:[e:613..741] = [t:613..741] ;8)sentence:[e:742..869] = [t:742..869] ;9)sentence:[e:870..1048] = [t:870..1048] ;10)sentence:[e:1049..1152] = [t:1049..1152] ;11)sentence:[e:1153..1223] = [t:1153..1223] ;12)sentence:[e:1224..1368] = [t:1224..1368] ;13)sentence:[e:1369..1432] = [t:1369..1432] ;14)sentence:[e:1433..1573] = [t:1433..1573] ;15)section:[e:1577..1622] = [t:1577..1622] ;section 0 Span:0..37 ;Cancer Lett 2000 Apr 28;152(1):45-51 (SEC (S (NN:[0..6] Cancer) (NNP:[7..11] Lett) (CD:[13..17] 2000) (NNP:[18..21] Apr) (CD:[22..29] 28;152-LRB-) (CD:[29..30] 1) (-RRB-:[30..31] -RRB-) (CD:[31..34] :45) (::[34..35] -) (CD:[35..37] 51))) ;sentence 1 Span:42..145 ;Somatic mutations of beta-catenin play a crucial role in the tumorigenesis of ; sporadic hepatoblastoma. ;[63..75]:gene-rna:"beta-catenin" ;[121..144]:malignancy:"sporadic hepatoblastoma" (SENT (S-HLN (NP-SBJ (NP (JJ:[42..49] Somatic) (NNS:[50..59] mutations)) (PP (IN:[60..62] of) (NP (NN:[63..75] beta-catenin)))) (VP (VBP:[76..80] play) (NP (DT:[81..82] a) (JJ:[83..90] crucial) (NN:[91..95] role)) (PP (IN:[96..98] in) (NP (NP (DT:[99..102] the) (NN:[103..116] tumorigenesis)) (PP (IN:[117..119] of) (NP (JJ:[121..129] sporadic) (NN:[130..144] hepatoblastoma)))))) (.:[144..145] .))) ;section 2 Span:149..190 ;Jeng YM, Wu MZ, Mao TL, Chang MH, Hsu HC. (SEC (FRAG (NNP:[149..153] Jeng) (NNP:[154..156] YM) (,:[156..157] ,) (NNP:[158..160] Wu) (NNP:[161..163] MZ) (,:[163..164] ,) (NNP:[165..168] Mao) (NNP:[169..171] TL) (,:[171..172] ,) (NNP:[173..178] Chang) (NNP:[179..181] MH) (,:[181..182] ,) (NNP:[183..186] Hsu) (NNP:[187..190] HC.))) ;section 3 Span:194..297 ;Department of Pathology, National Taiwan University Hospital, 7 Chung-Shan ;South Road, Taipei, Taiwan. (SEC (FRAG (NNP:[194..204] Department) (IN:[205..207] of) (NNP:[208..217] Pathology) (,:[217..218] ,) (NNP:[219..227] National) (NNP:[228..234] Taiwan) (NNP:[235..245] University) (NNP:[246..254] Hospital) (,:[254..255] ,) (NNP:[256..257] 7) (NNP:[258..263] Chung) (HYPH:[263..264] -) (NNP:[264..268] Shan) (NNP:[269..274] South) (NNP:[276..280] Road) (,:[280..281] ,) (NNP:[282..288] Taipei) (,:[288..289] ,) (NNP:[290..296] Taiwan) (.:[296..297] .))) ;sentence 4 Span:301..388 ;Hepatoblastoma (HB) is the most common malignant hepatic tumor during early ;childhood. ;[301..315]:malignancy:"Hepatoblastoma" ;[317..319]:malignancy:"HB" ;[340..363]:malignancy:"malignant hepatic tumor" (SENT (S (NP-SBJ (NP (NN:[301..315] Hepatoblastoma)) (NP (-LRB-:[316..317] -LRB-) (NN:[317..319] HB) (-RRB-:[319..320] -RRB-))) (VP (VBZ:[321..323] is) (NP-PRD (NP (DT:[324..327] the) (ADJP (RBS:[328..332] most) (JJ:[333..339] common)) (JJ:[340..349] malignant) (JJ:[350..357] hepatic) (NN:[358..363] tumor)) (PP-TMP (IN:[364..370] during) (NP (JJ:[371..376] early) (NN:[378..387] childhood))))) (.:[387..388] .))) ;sentence 5 Span:389..443 ;Its molecular pathogenesis is still poorly understood. (SENT (S (NP-SBJ-1 (PRP$:[389..392] Its) (JJ:[393..402] molecular) (NN:[403..415] pathogenesis)) (VP (VBZ:[416..418] is) (ADVP (RB:[419..424] still)) (ADVP (RB:[425..431] poorly)) (VP (VBN:[432..442] understood) (NP-1 (-NONE-:[442..442] *)))) (.:[442..443] .))) ;sentence 6 Span:444..611 ;Mutations of adenomatous polyposis coli (APC) gene have been identified in ;sporadic cases and in individuals associated with familial adenomatous ;polyposis syndrome. ;[458..484]:gene-rna:"adenomatous polyposis coli" ;[486..489]:gene-rna:"APC" ;[571..610]:malignancy:"familial adenomatous polyposis syndrome" (SENT (S (NP-SBJ-1 (NP (NNS:[444..453] Mutations)) (PP (IN:[454..456] of) (NP (NML (NML (JJ:[458..469] adenomatous) (NN:[470..479] polyposis) (NN:[480..484] coli)) (NML (-LRB-:[485..486] -LRB-) (NN:[486..489] APC) (-RRB-:[489..490] -RRB-))) (NN:[491..495] gene)))) (VP (VBP:[496..500] have) (VP (VBN:[501..505] been) (VP (VBN:[506..516] identified) (NP-1 (-NONE-:[516..516] *)) (PP (PP (IN:[517..519] in) (NP (JJ:[520..528] sporadic) (NNS:[529..534] cases))) (CC:[535..538] and) (PP-LOC (IN:[540..542] in) (NP (NP (NNS:[543..554] individuals)) (VP (VBN:[555..565] associated) (NP (-NONE-:[565..565] *)) (PP-CLR (IN:[566..570] with) (NP (JJ:[571..579] familial) (JJ:[580..591] adenomatous) (NN:[592..601] polyposis) (NN:[602..610] syndrome)))))))))) (.:[610..611] .))) ;sentence 7 Span:613..741 ;beta-catenin is a key element in the cadherin-mediated cell adhesion system ;and Wnt/wingless pathway, and is controlled by APC. ;[613..625]:gene-generic:"beta-catenin" ;[650..658]:gene-protein:"cadherin" ;[694..697]:gene-rna:"Wnt" ;[698..706]:gene-rna:"wingless" ;[737..740]:gene-rna:"APC" (SENT (S (NP-SBJ-1 (NN:[613..625] beta-catenin)) (VP (VP (VBZ:[626..628] is) (NP-PRD (NP (DT:[629..630] a) (JJ:[631..634] key) (NN:[635..642] element)) (PP (IN:[643..645] in) (NP (NP (DT:[646..649] the) (ADJP (NN:[650..658] cadherin) (HYPH:[658..659] -) (VBN:[659..667] mediated)) (NN:[668..672] cell) (NN:[673..681] adhesion) (NN:[682..688] system)) (CC:[689..692] and) (NP (NML (NN:[694..697] Wnt) (SYM:[697..698] /) (JJ:[698..706] wingless)) (NN:[707..714] pathway)))))) (,:[714..715] ,) (CC:[716..719] and) (VP (VBZ:[720..722] is) (VP (VBN:[723..733] controlled) (NP-1 (-NONE-:[733..733] *)) (PP (IN:[734..736] by) (NP-LGS (NN:[737..740] APC)))))) (.:[740..741] .))) ;sentence 8 Span:742..869 ;APC affects the degradation of beta-catenin by its NH(2)-terminal ;phosphorylation on the serine/threonine residues of exon 3. ;[742..745]:gene-rna:"APC" ;[774..786]:gene-protein:"beta-catenin" ;[862..868]:variation-location:"exon 3" (SENT (S (NP-SBJ (NN:[742..745] APC)) (VP (VBZ:[746..753] affects) (NP (NP (DT:[754..757] the) (NN:[758..769] degradation)) (PP (IN:[770..772] of) (NP (NN:[774..786] beta-catenin)))) (PP-MNR (IN:[787..789] by) (NP (NP (PRP$:[790..793] its) (NML (NN:[794..799] NH-LRB-2-RRB-) (HYPH:[799..800] -) (JJ:[800..808] terminal)) (NN:[809..824] phosphorylation)) (PP (IN:[825..827] on) (NP (NP (DT:[828..831] the) (NML (NN:[832..838] serine) (SYM:[838..839] /) (NN:[839..848] threonine)) (NNS:[850..858] residues)) (PP (IN:[859..861] of) (NP (NN:[862..866] exon) (CD:[867..868] 3)))))))) (.:[868..869] .))) ;sentence 9 Span:870..1048 ;Mutations of these phosphorylation sites are primary targets for activating ;mutations in several types of human cancer and lead to nuclear accumulation ;of beta-catenin protein. ;[1027..1039]:gene-protein:"beta-catenin" (SENT (S (NP-SBJ (NP (NNS:[870..879] Mutations)) (PP (IN:[880..882] of) (NP (DT:[883..888] these) (NN:[889..904] phosphorylation) (NNS:[905..910] sites)))) (VP (VP (VBP:[911..914] are) (NP-PRD (NP (JJ:[915..922] primary) (NNS:[923..930] targets)) (PP (IN:[932..935] for) (NP (VBG:[936..946] activating) (NNS:[947..956] mutations))) (PP (IN:[957..959] in) (NP (NP (JJ:[960..967] several) (NNS:[968..973] types)) (PP (IN:[974..976] of) (NP (JJ:[977..982] human) (NN:[983..989] cancer))))))) (CC:[990..993] and) (VP (VBP:[994..998] lead) (PP (TO:[999..1001] to) (NP (NP (JJ:[1002..1009] nuclear) (NN:[1011..1023] accumulation)) (PP (IN:[1024..1026] of) (NP (NN:[1027..1039] beta-catenin) (NN:[1040..1047] protein))))))) (.:[1047..1048] .))) ;sentence 10 Span:1049..1152 ;In this study, we examined nine patients with HB using immunohistochemistry ;and direct DNA sequencing. ;[1096..1098]:malignancy:"HB" (SENT (S (PP (IN:[1049..1051] In) (NP (DT:[1052..1056] this) (NN:[1057..1062] study))) (,:[1062..1063] ,) (NP-SBJ (PRP:[1064..1066] we)) (VP (VBD:[1067..1075] examined) (NP (NP (CD:[1076..1080] nine) (NNS:[1081..1089] patients)) (PP (IN:[1091..1095] with) (NP (NN:[1096..1098] HB)))) (S-MNR (NP-SBJ (-NONE-:[1098..1098] *)) (VP (VBG:[1099..1104] using) (NP (NP (NN:[1105..1125] immunohistochemistry)) (CC:[1126..1129] and) (NP (JJ:[1130..1136] direct) (NN:[1137..1140] DNA) (NN:[1141..1151] sequencing)))))) (.:[1151..1152] .))) ;sentence 11 Span:1153..1223 ;All nine cases showed predominant nuclear expression of beta-catenin. ;[1210..1222]:gene-protein:"beta-catenin" (SENT (S (NP-SBJ (DT:[1153..1156] All) (CD:[1157..1161] nine) (NNS:[1162..1167] cases)) (VP (VBD:[1169..1175] showed) (NP (NP (JJ:[1176..1187] predominant) (JJ:[1188..1195] nuclear) (NN:[1196..1206] expression)) (PP (IN:[1207..1209] of) (NP (NN:[1210..1222] beta-catenin))))) (.:[1222..1223] .))) ;sentence 12 Span:1224..1368 ;Eight cases (89%) showed mutations involving exon 3 of the beta-catenin ;gene, including five with deletions and three with missense mutations. ;[1250..1259]:variation-event:"mutations" ;[1270..1276]:variation-location:"exon 3" ;[1284..1296]:gene-rna:"beta-catenin" ;[1324..1333]:variation-type:"deletions" ;[1349..1367]:variation-type:"missense mutations" (SENT (S (NP-SBJ (CD:[1224..1229] Eight) (NNS:[1230..1235] cases) (PRN (-LRB-:[1236..1237] -LRB-) (NP (CD:[1237..1239] 89) (NN:[1239..1240] %)) (-RRB-:[1240..1241] -RRB-))) (VP (VBD:[1242..1248] showed) (NP (NP (NNS:[1250..1259] mutations)) (VP (VBG:[1260..1269] involving) (NP (NP (NN:[1270..1274] exon) (CD:[1275..1276] 3)) (PP (IN:[1277..1279] of) (NP (DT:[1280..1283] the) (NN:[1284..1296] beta-catenin) (NN:[1297..1301] gene)))))) (,:[1301..1302] ,) (PP (VBG:[1303..1312] including) (NP (NP (NP (CD:[1313..1317] five)) (PP (IN:[1318..1322] with) (NP (NNS:[1324..1333] deletions)))) (CC:[1334..1337] and) (NP (NP (CD:[1338..1343] three)) (PP (IN:[1344..1348] with) (NP (JJ:[1349..1357] missense) (NNS:[1358..1367] mutations))))))) (.:[1367..1368] .))) ;sentence 13 Span:1369..1432 ;All five deletions were in-frame deletions without frameshift. ;[1378..1387]:variation-type:"deletions" ;[1393..1431]:variation-type:"in-frame deletions without frameshift" (SENT (S (NP-SBJ (DT:[1369..1372] All) (CD:[1373..1377] five) (NNS:[1378..1387] deletions)) (VP (VBD:[1388..1392] were) (NP-PRD (NP (NML (IN:[1393..1395] in) (HYPH:[1395..1396] -) (NN:[1396..1401] frame)) (NNS:[1403..1412] deletions)) (PP (IN:[1413..1420] without) (NP (NN:[1421..1431] frameshift))))) (.:[1431..1432] .))) ;sentence 14 Span:1433..1573 ;The very high frequency of mutations in the beta-catenin gene suggests that ;beta-catenin mutations are crucial in the tumorigenesis of HB. ;[1478..1490]:gene-rna:"beta-catenin" ;[1510..1522]:gene-rna:"beta-catenin" ;[1570..1572]:malignancy:"HB" (SENT (S (NP-SBJ (NP (DT:[1433..1436] The) (ADJP (RB:[1437..1441] very) (JJ:[1442..1446] high)) (NN:[1447..1456] frequency)) (PP (IN:[1457..1459] of) (NP (NNS:[1460..1469] mutations))) (PP (IN:[1470..1472] in) (NP (DT:[1473..1476] the) (NN:[1478..1490] beta-catenin) (NN:[1491..1495] gene)))) (VP (VBZ:[1496..1504] suggests) (SBAR (IN:[1505..1509] that) (S (NP-SBJ (NN:[1510..1522] beta-catenin) (NNS:[1523..1532] mutations)) (VP (VBP:[1533..1536] are) (ADJP-PRD (JJ:[1537..1544] crucial) (PP (IN:[1545..1547] in) (NP (NP (DT:[1548..1551] the) (NN:[1553..1566] tumorigenesis)) (PP (IN:[1567..1569] of) (NP (NN:[1570..1572] HB)))))))))) (.:[1572..1573] .))) ;section 15 Span:1577..1622 ;PMID: 10754205 [PubMed - indexed for MEDLINE] (SEC (FRAG (NNP:[1577..1581] PMID) (::[1581..1582] :) (CD:[1583..1591] 10754205) (IN:[1592..1593] -LSB-) (NNP:[1593..1599] PubMed) (HYPH:[1600..1601] -) (JJ:[1602..1609] indexed) (IN:[1610..1613] for) (NNP:[1614..1622] MEDLINE-RSB-)))