This user guide section provides a navigation through this entire website.
Contents
- Hierarchical Table of Contents
Hierarchical Table of Contents
Available at all times on the left margin of this website is the hierarchy table of contents:
It contains links to all of the general sections and also serves as an outline of the entire project.
Overview
When the term Overview is pressed
from the hierarchy table of contents, the Overview for Mining the Bibliome page pops up, showing a list and link to the Overview, Resources, Documentation, Software/Tools, and Archives, all of the main sections of the website.
When the term Overview, under the contents section from the Overview for Mining the Bibliome page is pressed, the Overview section is displayed, showing an abstract of the project.
About Us/Credits
When the term About Us/Credits is pressed, the About Us/Credits page pops up, showing a list and link to all of the credits of this project.
Resources
When the term Resources is pressed from the hierarchy table of contents, the Resources page pops up, showing a list and link to the Data, Publications, and Works of Interest, all of the subsections of the Resources.
Data
When the term Data is pressed from the hierarchy table of contents, the Data page pops up, containing the latest release of texts and documentation of the project.
Publications
When the term Publications is pressed from the hierarchy table of contents, the Publications page pops up, listing all of the current publications from this project.
Works of Interest
When the term
Works of Interest is pressed from the hierarchy table of contents, the Works of Interest page pops up, listing links that are in affiliation to this project, along with resources and readings that are related to this project.
Documentation
When the term Documentation is pressed from the hierarchy table of contents, the Documentation page pops up, listing links to the Guided Tour, Description of Data, Software/Tools, and Docs for Annotators, all of the subsections of the Documentation.
User Guide
When the term User Guide is pressed from the hierarchy table of contents, the User Guide page pops up, showing the guidelines of this website.
Guided Tour
When the term Guided Tour is pressed from the hierarchy table of contents, the Guided Tour page pops up, giving users and annotators their own navigation through this website.
Description of Data
When the term Description of Data is pressed from the hierarchy table of contents, the Description of Data page pops up, providing a brief description and navigation through the Data section.
HTML View
Within the Description of Data page, there are two more sections, the CYP450 HTML View page and the Oncology HTML View page. These sections describe how to view, understand the legends to these annotated files, as well as contain links to these abstracts from the PubMed site.
Software/Tools
When the term Software/Tools is pressed from the hierarchy table of contents, the Software/Tools page pops up, listing links to the Software/Tools, WordFreak, LAW Workflow System, Annotation Database, Taggers, and TreeEditor, all of the subsections of the Software/Tools.
When the term Software/Tools, under the contents section from the Software/Tools page is pressed, the Software/Tools section is displayed. A list of all the links to the software/Tools created specifically for this project as well as from outside resources are shown here.
Docs for Annotators
When the term Docs for Annotators is pressed from the hierarchy table of contents, the Documentation for Annotators page pops up, listing links to the Policies, Annotation Guidelines, Email Archives, and Contact Information, all of the subsections of the Documentation for Annotators.
Annotation Guidelines
When the term Annotation Guidelines is pressed from the Documentation for Annotators page, the Annotation Guidelines page pops up, listing links to the General Annotation Guidelines, Training, Pretagging, POS, Entity, CYP450, Oncology, Relations, Treebanking, and Fixup, all of the subsections of the Annotation Guidelines.
Software/Tools
When the term Software/Tools is pressed from the hierarchy table of contents, the Software/Tools page pops up, listing links to the Software/Tools, WordFreak, LAW Workflow System, Annotation Database, Taggers, and TreeEditor, all of the subsections of the Software/Tools.
When the term Software/Tools, under the contents section from the Software/Tools page is pressed, the Software/Tools section is displayed. A list of all the links to the software/Tools created specifically for this project as well as from outside resources are shown here.
WordFreak
When the term WordFreak is pressed from the hierarchy table of contents, the WordFreak page pops up, listing links for directions on how to setup, run, and use WordFreak.
LAW Workflow System
When the term LAW Workflow System is pressed from the hierarchy table of contents, the LAW Workflow System page pops up, listing links to the Software Guidelines, Annotator Guidelines, and Workflow Management Guidelines, all of the subsections of the LAW Workflow System.
Annotation Database
When the term Annotation Database is pressed from the hierarchy table of contents, the Annotation Database page pops up, providing a link and directions on how to use the Annotation Database.
Taggers
When the term Taggers is pressed from the hierarchy table of contents, the Taggers page pops up, listing links to the Paragraph Taggers, Sentence Taggers, Tokenizer Taggers, POS Taggers, Oncology Entity Taggers, Gene/Genomic Variation Taggers, Variation Taggers, CYP450 Entity Taggers, Oncology Relation Taggers, and CYP450 Relation Taggers, all of the subsections of the Taggers.
Tree Editor
When the term TreeEditor is pressed from the hierarchy table of contents, the TreeEditor page pops up, providing links and information about the TreeEditor.
Archive Releases
When the term
Archive Releases is pressed from the hierarchy table of contents, the Archive Releases page pops up, listing all of the releases, their links, and their affiliated Jar files that are needed for this project.
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