Email Contact: bioie@ldc.upenn.edu
This material is based upon work supported by the National Science Foundation under Grant No.: EIA-0205448
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Software/Tools
      -WordFreak
      -LAW Workflow System
      -Annotation Database
      -Auto Text Processing
      -TreeEditor
      -Taggers
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Mining the Bibliome
Software/Tools
 
Each of the following provides useful links to software that are needed to install, run the software/tool(s) for the ITR/E project, as well as directions on how to use each software/tool, respectively.

Contents

  1. Software/Tools:
    The Software/Tools section contains links to the software/tools required for this project.

  2. WordFreak:
    The WordFreak section includes set up and user guide information on how to use WordFreak.

  3. LAW Workflow System:
    The LAW workflow system section describes the system, and contains separate guidelines for annotators and managers, showing them how to navigate through the workflow system.

  4. Annotation Database:
    The annotation database section provides a brief description of how to use the database of tags tool.

  5. Miner (Automatic Text Processing):
    The Miner Automatic Text Processing section provides a brief description of how to use the automatic text processing tool.

  6. TreeEditor:
    The TreeEditor section contains brief descriptions of the TreeEditor and how to use it.

  7. Taggers:
    The taggers section describes and contains guidelines to all of the taggers and parsers created for this project.



Software/Tools

Software/Tools Created Specifically for This Project

Annotation tool ("Wordfreak"): http://www.sf.net/projects/wordfreak or
download/run WordFreak: WordFreak_v2.2_created_8_29_04
for WindowsXP 2005 and beyond: WordFreak_v2.2_created_3_07_05

Workflow management system (LAW System): http://www.sf.net/projects/law or
login to the LAW System: https://venom.ldc.upenn.edu/login.jsp

Annotation Database (Database of Tags): http://bioie.ldc.upenn.edu/_bad/index.jsp

Miner (Automatic Text Processing): http://bioie.ldc.upenn.edu/_miner/

Taggers: http://www.seas.upenn.edu/~strctlrn/BioTagger/BioTagger.html

Software Dependencies/Jars

This link to the archives contains a page to all the jar and other software dependencies.

Software/Tools from Outside Resources

Java software: www.java.com

Mac OS update: http://www.info.apple.com/support/downloads.html or
http://www.apple.com/downloads/macosx/features/java/

Winzip software: http://www.winzip.com

Stuffit Expander: http://www.stuffit.com/expander

GNU Ghostscript: http://www.cs.wisc.edu/~ghost/doc/gnu/index.htm