This page provides a navigation and description through the "Data" section, the current release to this project.
Contents
- Data
- Documentation
Data
The main page contains the link to the data section:
Once the term "Data" is clicked, the data section contains links to the CYP450, Oncology, and Tools sections of each project:
CYP450
Once the term "CYP450" is clicked, the CYP450 section contains links to the Entity and Treebank sections belonging to the CYP450 domain:
Entity
Once the term "Entity" is clicked, the Entity section contains links to the HTML View, WordFreak Files, and Extracted ML Data sections belonging to the CYP450 domain:
HTML View
Once the term "HTML View" is clicked, the HTML View section contains a list of CYP450 files that have been annotated:
This CYP450 HTML View link describes how to view these annotated files through its legends, display controls, and a direct link to where the article came from the PubMed site.
WordFreak Files
Under the WordFreak Files section, the term "[get the archive]" may be clicked to download raw and annotated CYP450 files. These files may be seen using WordFreak.
Extracted ML Data
Under the Extracted ML Data section, the term "[statistics]" may be clicked to see the total amount of CYP450 files, along with the number of annotations, relations, and chains that may be contained in these files. Those with permissible server rights may click on the terms "Extracted ML Data" to get extracted CYP450 anntation information in XML format.
Treebank
Under the Treebank section, the term "[get the archive]" may be clicked to download Treebank annotation information in a special ".mrg" format for files in the CYP450 domain.
Oncology
Once the term "Oncology" is clicked, the Oncology section contains links to the Entity and Treebank sections belonging to the Oncology domain:
Entity
Once the term "Entity" is clicked, the Entity section contains links to the HTML View, WordFreak Files, and Extracted ML Data sections belonging to the Oncology domain:
HTML View
Once the term "HTML View" is clicked, the HTML View section contains a list of Oncology files that have been annotated:
This Oncology HTML View link describes how to view these annotated files through its legends, display controls, and a direct link to where the article came from the PubMed site.
WordFreak Files
Under the WordFreak Files section, the term "[get the archive]" may be clicked to download raw and annotated Oncology files. These files may be seen using WordFreak.
Extracted ML Data
Under the Extracted ML Data section, the term "[statistics]" may be clicked to see the total amount of Oncology files, along with the number of annotations, relations, and chains that may be contained in these files. Those with permissible server rights may click on the terms "Extracted ML Data" to get extracted Oncology anntation information in XML format.
Treebank
Under the Treebank section, the term "[get the archive]" may be clicked to download Treebank annotation information in a special ".mrg" format for files in the Oncology domain.
Tools
Once the term "Tools" is clicked, the Software/Tools page of the BioIE website is brought up.
Documentation
The main page contains the link to the documentation section:
Once the term "Documentation" is clicked, it opens up a documentation page which briefly describes the "Mining the Bibliome" project.
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